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Tue, May 14

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Virtual event

FIJI/3D Workshop

Dr. Benjamin Schmid Optical Imaging Competence Centre Erlangen Friedrich-Alexander Universität Erlangen-Nürnberg

FIJI/3D Workshop
FIJI/3D Workshop

Time & Location

May 14, 2024, 10:00 AM – 4:00 PM

Virtual event

About the event

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Part I: Introduction to Fiji/ImageJ

§Image information and image types

§Image enhancements and lookup tables

§Intensity quantification and measurements

Example: Quantification of the organoid update assay

§What macros can do

§From raw images to figures: stills, montages, orthogonal views, scale bars etc.

Part II: Creating 3D animations with 3Dscript

§Installation

§Introduction to the user interface

§Rendering adjustments: colors, transfer functions, etc.

§Introduction to the animation language

§Creating reproducible movies

§Creating multi-panel movies

Automating movie creation with macros

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